Transcript: ENST00000371370.3 LRRC42-002

Description

leucine rich repeat containing 42 [Source:HGNC Symbol;Acc:28792]

Gene Synonyms

MGC8974, dJ167A19.4

Location

Chromosome 1: 54,411,750-54,433,841 forward strand.

About this transcript

This transcript has 9 exons, is annotated with 6 domains and features, is associated with 9694 variant alleles and maps to 434 oligo probes.

Gene

This transcript is a product of gene ENSG00000116212.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000371370.3	LRRC42-002	2037	428aa	ENSP00000360421.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS585	A6NL66 E7EP35 Q9Y546	NM_001256409.1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000319223.4	LRRC42-001	1727	428aa	ENSP00000318185.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS585	A6NL66 E7EP35 Q9Y546	NM_052940.4	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000444987.1	LRRC42-004	1044	239aa	ENSP00000389368.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A6NL66 E7EP35	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000371368.1	LRRC42-003	838	192aa	ENSP00000360419.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A6NL66	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000477905.1	LRRC42-005	611	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-

Summary

Statistics

Exons: 9, Coding exons: 7, Transcript length: 2,037 bps, Translation length: 428 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9Y546

CCDS

This transcript is a member of the Human CCDS set: CCDS585

Version

ENST00000371370.3

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000023250 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

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Transcript: ENST00000371370.3 LRRC42-002

Summary