Transcript: ENST00000497182.1 TAF1B-006

Description

TATA box binding protein (TBP)-associated factor, RNA polymerase I, B, 63kDa [Source:HGNC Symbol;Acc:11533]

Gene Synonyms

MGC:9349, RAF1B, RAFI63, SL1, TAFI63

Location

Chromosome 2: 9,983,648-9,985,949 forward strand.

About this transcript

This transcript has 2 exons, is associated with 1258 variant alleles and maps to 84 oligo probes.

Gene

This transcript is a product of gene ENSG00000115750.12 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000263663.5	TAF1B-001	2387	588aa	ENSP00000263663.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS33143	Q53T94	NM_005680.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000396242.3	TAF1B-201	1931	333aa	ENSP00000379542.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q53T94	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000492648.2	TAF1B-010	1045	216aa	ENSP00000475608.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000434858.1	TAF1B-002	1592	194aa	ENSP00000414184.1	Nonsense mediated decay		F8WE32	-	-
ENST00000416181.1	TAF1B-007	297	57aa	ENSP00000402955.1	Nonsense mediated decay		F8WDU0	-	-
ENST00000402170.1	TAF1B-009	715	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000469895.1	TAF1B-003	681	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000490432.1	TAF1B-004	620	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000480197.1	TAF1B-005	554	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000404869.3	TAF1B-008	505	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000497182.1	TAF1B-006	642	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 2, Coding exons: 0, Transcript length: 642 bps,

Version

ENST00000497182.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000323431 (version 1)

EMBL-EBI User Survey 2024

Favourite species

All species

Recent locations

Transcript: ENST00000497182.1 TAF1B-006

Summary