Transcript: ENST00000263663.5 TAF1B-001

Description

TATA box binding protein (TBP)-associated factor, RNA polymerase I, B, 63kDa [Source:HGNC Symbol;Acc:11533]

Gene Synonyms

MGC:9349, RAF1B, RAFI63, SL1, TAFI63

Location

Chromosome 2: 9,983,483-10,074,545 forward strand.

About this transcript

This transcript has 15 exons, is annotated with 5 domains and features, is associated with 38580 variant alleles and maps to 617 oligo probes.

Gene

This transcript is a product of gene ENSG00000115750.12 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000263663.5	TAF1B-001	2387	588aa	ENSP00000263663.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS33143	Q53T94	NM_005680.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000396242.3	TAF1B-201	1931	333aa	ENSP00000379542.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q53T94	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000492648.2	TAF1B-010	1045	216aa	ENSP00000475608.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000434858.1	TAF1B-002	1592	194aa	ENSP00000414184.1	Nonsense mediated decay		F8WE32	-	-
ENST00000416181.1	TAF1B-007	297	57aa	ENSP00000402955.1	Nonsense mediated decay		F8WDU0	-	-
ENST00000402170.1	TAF1B-009	715	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000469895.1	TAF1B-003	681	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000490432.1	TAF1B-004	620	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000480197.1	TAF1B-005	554	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000404869.3	TAF1B-008	505	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000497182.1	TAF1B-006	642	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 15, Coding exons: 15, Transcript length: 2,387 bps, Translation length: 588 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q53T94

CCDS

This transcript is a member of the Human CCDS set: CCDS33143

Version

ENST00000263663.5

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000323426 (version 2)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

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Transcript: ENST00000263663.5 TAF1B-001

Summary