Transcript: ENST00000489214.1 GNLY-003

Description

granulysin [Source:HGNC Symbol;Acc:4414]

Gene Synonyms

519, D2S69E, LAG-2, LAG2, NKG5, TLA519

Location

Chromosome 2: 85,921,416-85,923,514 forward strand.

About this transcript

This transcript has 4 exons, is associated with 1092 variant alleles and maps to 318 oligo probes.

Gene

This transcript is a product of gene ENSG00000115523.12 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000263863.4	GNLY-001	846	145aa	ENSP00000263863.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS1984	P22749	NM_006433.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000409696.3	GNLY-008	858	130aa	ENSP00000387116.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS46354	P22749	NM_012483.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000524600.1	GNLY-010	750	172aa	ENSP00000436423.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B4E3H9	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000526018.1	GNLY-014	561	187aa	ENSP00000434467.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000533041.1	GNLY-011	771	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000534351.1	GNLY-012	533	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000489980.1	GNLY-007	2055	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000491234.1	GNLY-009	962	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000489214.1	GNLY-003	960	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000470974.1	GNLY-006	959	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000464298.1	GNLY-004	955	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000488945.1	GNLY-002	924	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000482900.1	GNLY-005	751	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000531685.1	GNLY-013	723	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 4, Coding exons: 0, Transcript length: 960 bps,

Version

ENST00000489214.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000329878 (version 2)

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Transcript: ENST00000489214.1 GNLY-003

Summary