Transcript: ENST00000450366.2 LANCL1-001

Description

LanC lantibiotic synthetase component C-like 1 (bacterial) [Source:HGNC Symbol;Acc:6508]

Gene Synonyms

GPR69A, p40

Location

Chromosome 2: 211,295,973-211,341,491 reverse strand.

About this transcript

This transcript has 10 exons, is annotated with 18 domains and features, is associated with 20329 variant alleles and maps to 519 oligo probes.

Gene

This transcript is a product of gene ENSG00000115365.7 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000443314.1	LANCL1-005	4781	399aa	ENSP00000388713.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS2392	E9PHS0 O43813 Q53TN2	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000450366.2	LANCL1-001	4602	399aa	ENSP00000393597.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS2392	E9PHS0 O43813 Q53TN2	NM_006055.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000441020.3	LANCL1-007	4503	399aa	ENSP00000393323.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS2392	E9PHS0 O43813 Q53TN2	NM_001136575.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000233714.4	LANCL1-004	1647	399aa	ENSP00000233714.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS2392	E9PHS0 O43813 Q53TN2	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000431941.2	LANCL1-003	1270	399aa	ENSP00000397646.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS2392	E9PHS0 O43813 Q53TN2	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000448951.1	LANCL1-008	808	196aa	ENSP00000396518.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E9PHS0	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000412863.1	LANCL1-010	441	147aa	ENSP00000405364.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000453956.1	LANCL1-009	590	82aa	ENSP00000395442.1	Nonsense mediated decay		F8WDS9	-	-

Summary

Statistics

Exons: 10, Coding exons: 9, Transcript length: 4,602 bps, Translation length: 399 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: O43813

CCDS

This transcript is a member of the Human CCDS set: CCDS2392

Version

ENST00000450366.2

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000256565 (version 4)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000450366.2 LANCL1-001

Summary