Transcript: ENST00000258080.3 HTRA2-001

Description

HtrA serine peptidase 2 [Source:HGNC Symbol;Acc:14348]

Gene Synonyms

OMI, PARK13, PRSS25

Location

Chromosome 2: 74,756,504-74,760,472 forward strand.

About this transcript

This transcript has 8 exons, is annotated with 20 domains and features, is associated with 2198 variant alleles and maps to 579 oligo probes.

Gene

This transcript is a product of gene ENSG00000115317.7 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000258080.3	HTRA2-001	2367	458aa	ENSP00000258080.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS1951	O43464	NM_013247.4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000437202.1	HTRA2-005	1479	423aa	ENSP00000399166.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		O43464	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000352222.3	HTRA2-002	1450	361aa	ENSP00000312893.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS1952	O43464	NM_145074.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000467961.1	HTRA2-004	1323	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000462909.1	HTRA2-003	1294	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000484881.1	HTRA2-008	740	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000484352.1	HTRA2-006	1771	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000482331.1	HTRA2-007	980	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000465521.1	HTRA2-010	745	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000482205.1	HTRA2-009	564	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 8, Coding exons: 8, Transcript length: 2,367 bps, Translation length: 458 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: O43464

CCDS

This transcript is a member of the Human CCDS set: CCDS1951

Version

ENST00000258080.3

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000252219 (version 2)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

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Transcript: ENST00000258080.3 HTRA2-001

Summary