Transcript: ENST00000441747.2 PCSK4-003

Description

proprotein convertase subtilisin/kexin type 4 [Source:HGNC Symbol;Acc:8746]

Gene Synonyms

DKFZp434B217, MGC34749, PC4, SPC5

Location

Chromosome 19: 1,481,427-1,490,341 reverse strand.

About this transcript

This transcript has 12 exons, is associated with 5933 variant alleles and maps to 435 oligo probes.

Gene

This transcript is a product of gene ENSG00000115257.11 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000300954.5	PCSK4-001	2661	755aa	ENSP00000300954.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS12069	Q6UW60	NM_017573.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000588671.1	PCSK4-010	748	229aa	ENSP00000466742.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		K7EN14	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000591201.1	PCSK4-004	2358	318aa	ENSP00000465102.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000588195.1	PCSK4-006	1806	525aa	ENSP00000466528.1	Nonsense mediated decay		K7EMJ4 K7EN14	-	-
ENST00000591303.1	PCSK4-013	537	131aa	ENSP00000465649.1	Nonsense mediated decay		K7EKJ6	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000587784.1	PCSK4-007	565	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000590057.1	PCSK4-008	540	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000591687.1	PCSK4-009	455	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000586616.1	PCSK4-002	2855	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000441747.2	PCSK4-003	2641	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000586002.2	PCSK4-011	545	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000586074.1	PCSK4-012	537	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 12, Coding exons: 0, Transcript length: 2,641 bps,

Version

ENST00000441747.2

Type

Retained intron

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000449702 (version 1)

Favourite species

All species

Recent locations

Transcript: ENST00000441747.2 PCSK4-003

Summary