Transcript: ENST00000233025.7 SPCS1-001

Description

signal peptidase complex subunit 1 homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:23401]

Gene Synonyms

HSPC033, SPC1, SPC12, YJR010C-A

Location

Chromosome 3: 52,739,652-52,742,182 forward strand.

About this transcript

This transcript has 4 exons, is annotated with 6 domains and features, is associated with 1479 variant alleles and maps to 299 oligo probes.

Gene

This transcript is a product of gene ENSG00000114902.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000233025.7	SPCS1-001	1274	169aa	ENSP00000233025.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS33769	C9JBL1 Q9Y6A9	NM_014041.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000602728.1	SPCS1-006	832	102aa	ENSP00000473265.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JBL1 Q9Y6A9	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000423431.1	SPCS1-004	822	80aa	ENSP00000391610.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JBL1	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000474945.1	SPCS1-003	981	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000448693.2	SPCS1-002	826	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 4, Coding exons: 4, Transcript length: 1,274 bps, Translation length: 169 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9Y6A9

CCDS

This transcript is a member of the Human CCDS set: CCDS33769

Version

ENST00000233025.7

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000337681 (version 4)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000233025.7 SPCS1-001

Summary