Transcript: ENST00000497162.1 ABTB1-016

Description

ankyrin repeat and BTB (POZ) domain containing 1 [Source:HGNC Symbol;Acc:18275]

Gene Synonyms

BPOZ, BTB3, BTBD21, Btb3, EF1ABP

Location

Chromosome 3: 127,396,020-127,398,906 forward strand.

About this transcript

This transcript has 5 exons, is annotated with 6 domains and features, is associated with 1641 variant alleles and maps to 307 oligo probes.

Gene

This transcript is a product of gene ENSG00000114626.13 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000232744.8	ABTB1-001	1965	478aa	ENSP00000232744.8	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS3045	Q969K4	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000468137.1	ABTB1-006	2065	336aa	ENSP00000417366.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS46901	Q969K4	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000393363.3	ABTB1-201	1975	336aa	ENSP00000377030.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS46901	Q969K4	NM_172027.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000453791.2	ABTB1-004	1961	336aa	ENSP00000412684.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS46901	Q969K4	NM_032548.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000475042.1	ABTB1-005	1915	57aa	ENSP00000418641.1	Nonsense mediated decay		F2Z3F5	-	-
ENST00000483857.1	ABTB1-008	1027	57aa	ENSP00000420748.1	Nonsense mediated decay		F2Z3F5	-	-
ENST00000497162.1	ABTB1-016	563	141aa	ENSP00000418439.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000466612.1	ABTB1-011	715	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000467179.1	ABTB1-013	691	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000491633.1	ABTB1-017	471	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000464431.1	ABTB1-007	5061	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000475265.1	ABTB1-009	1108	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000478298.1	ABTB1-014	818	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000479280.1	ABTB1-012	746	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000493365.1	ABTB1-010	715	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000474129.1	ABTB1-015	683	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 5, Coding exons: 4, Transcript length: 563 bps, Translation length: 141 residues

Incomplete CDS

5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Version

ENST00000497162.1

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000356610 (version 1)

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Transcript: ENST00000497162.1 ABTB1-016

Summary