Transcript: ENST00000509297.1 SMAD5-004

Description

SMAD family member 5 [Source:HGNC Symbol;Acc:6771]

Gene Synonyms

DWFC, Dwfc, JV5-1, MADH5

Location

Chromosome 5: 135,469,042-135,489,452 forward strand.

About this transcript

This transcript has 3 exons, is associated with 8471 variant alleles and maps to 203 oligo probes.

Gene

This transcript is a product of gene ENSG00000113658.12 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	RefSeq	Flags
ENST00000545279.1	SMAD5-201	7009	464aa	ENSP00000441954.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	D6R9D4 D6RBB4 D6RIZ9 F5GWU7 Q68DB7 Q99717	NM_005903.5	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000545620.1	SMAD5-202	6934	464aa	ENSP00000446474.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	D6R9D4 D6RBB4 D6RIZ9 F5GWU7 Q68DB7 Q99717	NM_001001420.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000509297.1	SMAD5-004	854	1aa	ENSP00000426696.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000511116.1	SMAD5-003	847	134aa	ENSP00000424279.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	D6R9D4 D6RBB4 D6RIZ9	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000507118.1	SMAD5-002	669	128aa	ENSP00000425749.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	D6R9D4 D6RIZ9	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000507637.1	SMAD5-010	638	174aa	ENSP00000427474.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000506223.1	SMAD5-008	548	80aa	ENSP00000422954.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	D6R9D4	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000515005.1	SMAD5-005	368	1aa	ENSP00000427330.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000513418.1	SMAD5-012	523	60aa	ENSP00000427650.1	Nonsense mediated decay	-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000514641.2	SMAD5-001	7011	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-	-	-
ENST00000514777.1	SMAD5-011	588	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-	-	-
ENST00000509962.1	SMAD5-007	547	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-	-	-
ENST00000507245.1	SMAD5-009	577	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-	-

Summary

Statistics

Exons: 3, Coding exons: 1, Transcript length: 854 bps, Translation length: 1 residues

Incomplete CDS

3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete

Version

ENST00000509297.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000372099 (version 1)

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Transcript: ENST00000509297.1 SMAD5-004

Summary