Transcript: ENST00000453394.1 RAD50-003

Description

RAD50 homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:9816]

Gene Synonyms

NBSLD, RAD50-2, RAD502, hRad50

Location

Chromosome 5: 131,892,923-131,931,460 forward strand.

About this transcript

This transcript has 12 exons, is annotated with 16 domains and features, is associated with 17586 variant alleles and maps to 313 oligo probes.

Gene

This transcript is a product of gene ENSG00000113522.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000265335.6	RAD50-001	6022	1312aa	ENSP00000265335.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS34233	A8K3I2 C9JNH8 Q92878	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000378823.3	RAD50-201	6597	1173aa	ENSP00000368100.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q92878	NM_005732.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000453394.1	RAD50-003	2076	660aa	ENSP00000400049.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JNH8 E7EN38	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000434288.1	RAD50-005	1052	158aa	ENSP00000396100.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000416135.1	RAD50-006	923	100aa	ENSP00000389515.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JNH8	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000455677.1	RAD50-009	564	157aa	ENSP00000396860.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000533482.1	RAD50-002	4373	102aa	ENSP00000431225.1	Nonsense mediated decay		E9PM98	-	-
ENST00000423956.1	RAD50-004	2915	551aa	ENSP00000390971.1	Nonsense mediated decay		C9JNH8 E7ESD9	-	-
ENST00000487596.1	RAD50-007	738	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000496204.1	RAD50-008	473	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000489420.1	RAD50-010	403	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-

Summary

Statistics

Exons: 12, Coding exons: 12, Transcript length: 2,076 bps, Translation length: 660 residues

Incomplete CDS

3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete

Version

ENST00000453394.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000132568 (version 1)

Favourite species

All species

Recent locations

Transcript: ENST00000453394.1 RAD50-003

Summary