Transcript: ENST00000341754.4 RAD1-003

Description

RAD1 homolog (S. pombe) [Source:HGNC Symbol;Acc:9806]

Gene Synonyms

HRAD1, REC1

Location

Chromosome 5: 34,908,277-34,919,094 reverse strand.

About this transcript

This transcript has 9 exons, is annotated with 17 domains and features, is associated with 5038 variant alleles and maps to 576 oligo probes.

Gene

This transcript is a product of gene ENSG00000113456.14 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000382038.2	RAD1-001	5770	282aa	ENSP00000371469.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS3905	O60671	NM_002853.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000341754.4	RAD1-003	2341	282aa	ENSP00000340879.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS3905	O60671	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000513914.1	RAD1-005	1328	84aa	ENSP00000421007.1	Nonsense mediated decay		D6R9A1	-	-
ENST00000325577.4	RAD1-002	1153	68aa	ENSP00000313467.4	Nonsense mediated decay		O60671	-	-
ENST00000511456.1	RAD1-006	664	84aa	ENSP00000423253.1	Nonsense mediated decay		D6R9A1	-	-
ENST00000506311.1	RAD1-004	574	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000512192.1	RAD1-007	263	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 9, Coding exons: 5, Transcript length: 2,341 bps, Translation length: 282 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: O60671

CCDS

This transcript is a member of the Human CCDS set: CCDS3905

Version

ENST00000341754.4

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000207569 (version 2)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000341754.4 RAD1-003

Summary