Transcript: ENST00000433297.2 HMGCS1-003

Description

3-hydroxy-3-methylglutaryl-CoA synthase 1 (soluble) [Source:HGNC Symbol;Acc:5007]

Gene Synonyms

HMGCS

Location

Chromosome 5: 43,289,497-43,313,614 reverse strand.

About this transcript

This transcript has 10 exons, is annotated with 10 domains and features, is associated with 9779 variant alleles and maps to 591 oligo probes.

Gene

This transcript is a product of gene ENSG00000112972.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000325110.6	HMGCS1-001	3506	520aa	ENSP00000322706.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS34154	D6RIW1 Q01581 Q8N995	NM_001098272.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000433297.2	HMGCS1-003	3466	520aa	ENSP00000399402.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS34154	D6RIW1 Q01581 Q8N995	NM_002130.7	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000511774.1	HMGCS1-004	500	95aa	ENSP00000427339.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		D6RIW1	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000507004.1	HMGCS1-006	950	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000507293.1	HMGCS1-005	708	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000508319.1	HMGCS1-008	591	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000514610.1	HMGCS1-007	555	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 10, Coding exons: 9, Transcript length: 3,466 bps, Translation length: 520 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q01581

CCDS

This transcript is a member of the Human CCDS set: CCDS34154

Version

ENST00000433297.2

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000368024 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000433297.2 HMGCS1-003

Summary