Transcript: ENST00000230859.6 PAPD7-001

Description

PAP associated domain containing 7 [Source:HGNC Symbol;Acc:16705]

Gene Synonyms

LAK-1, LAK1, POLK, POLS, TRF4, TRF4-1, TRF41, TUTASE5

Location

Chromosome 5: 6,714,718-6,757,161 forward strand.

About this transcript

This transcript has 13 exons, is annotated with 10 domains and features, is associated with 20015 variant alleles and maps to 531 oligo probes.

Gene

This transcript is a product of gene ENSG00000112941.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000230859.6	PAPD7-001	3861	542aa	ENSP00000230859.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS3871	B4E0T3 B7ZLL4 D6RJD0 M1JCE6 Q5XG87	NM_006999.4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000515721.1	PAPD7-007	603	27aa	ENSP00000427232.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		D6RJD0	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000514697.1	PAPD7-003	1901	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000511764.1	PAPD7-004	741	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000505457.1	PAPD7-005	589	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000514410.1	PAPD7-006	575	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 13, Coding exons: 12, Transcript length: 3,861 bps, Translation length: 542 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q5XG87

CCDS

This transcript is a member of the Human CCDS set: CCDS3871

Version

ENST00000230859.6

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000206904 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000230859.6 PAPD7-001

Summary