Transcript: ENST00000513968.1 SEMA5A-002

Description

sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5A [Source:HGNC Symbol;Acc:10736]

Gene Synonyms

SEMAF, semF

Location

Chromosome 5: 9,202,236-9,380,313 reverse strand.

About this transcript

This transcript has 8 exons, is annotated with 8 domains and features, is associated with 80331 variant alleles and maps to 164 oligo probes.

Gene

This transcript is a product of gene ENSG00000112902.7 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000382496.5	SEMA5A-001	11762	1074aa	ENSP00000371936.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS3875	B4DE33 D6RAF4 Q13591	NM_003966.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000513968.1	SEMA5A-002	935	254aa	ENSP00000421961.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		D6RAF4	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000514923.1	SEMA5A-003	605	202aa	ENSP00000424171.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000509486.1	SEMA5A-004	538	91aa	ENSP00000423574.1	Nonsense mediated decay		D6R9K6	-	-

Summary

Statistics

Exons: 8, Coding exons: 7, Transcript length: 935 bps, Translation length: 254 residues

Incomplete CDS

3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete

Version

ENST00000513968.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000365997 (version 1)

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Transcript: ENST00000513968.1 SEMA5A-002

Summary