Transcript: ENST00000511871.1 SIM1-002

Description

single-minded family bHLH transcription factor 1 [Source:HGNC Symbol;Acc:10882]

Gene Synonyms

BHLHE14, bHLHe14

Location

About this transcript

This transcript has 2 exons, is associated with 1180 variant alleles and maps to 100 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000369208.3	SIM1-001	8430	766aa	ENSP00000358210.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS5045	P81133	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000262901.4	SIM1-201	3999	766aa	ENSP00000262901.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS5045	P81133	NM_005068.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000511871.1	SIM1-002	1609	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000505753.1	SIM1-003	565	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 2, Coding exons: 0, Transcript length: 1,609 bps,

Version

ENST00000511871.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000366952 (version 1)