Transcript: ENST00000494320.1 RNF8-006

Description

ring finger protein 8, E3 ubiquitin protein ligase [Source:HGNC Symbol;Acc:10071]

Gene Synonyms

KIAA0646, hRNF8

Location

Chromosome 6: 37,321,755-37,336,650 forward strand.

About this transcript

This transcript has 4 exons, is associated with 5810 variant alleles and maps to 196 oligo probes.

Gene

This transcript is a product of gene ENSG00000112130.12 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000373479.4	RNF8-001	5631	485aa	ENSP00000362578.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS4834	C9J858 O76064	NM_183078.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000469731.1	RNF8-003	1800	448aa	ENSP00000418879.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS4833	C9J858 O76064	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000498460.1	RNF8-002	835	208aa	ENSP00000417599.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000487950.1	RNF8-007	731	205aa	ENSP00000417736.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9J858	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000394443.4	RNF8-201	419	98aa	ENSP00000377961.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding		O76064	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000229866.6	RNF8-004	2124	98aa	ENSP00000229866.6	Nonsense mediated decay		O76064	-	-
ENST00000494320.1	RNF8-006	977	49aa	ENSP00000420268.1	Nonsense mediated decay		F8WDH8	-	-
ENST00000469316.1	RNF8-008	608	89aa	ENSP00000419859.1	Nonsense mediated decay		F8WEW6	-	-
ENST00000479516.1	RNF8-005	1525	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-

Summary

Statistics

Exons: 4, Coding exons: 2, Transcript length: 977 bps, Translation length: 49 residues

Version

ENST00000494320.1

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000357596 (version 1)

Favourite species

All species

Recent locations

Transcript: ENST00000494320.1 RNF8-006

Summary