Transcript: ENST00000229771.6 TULP1-003

Description

tubby like protein 1 [Source:HGNC Symbol;Acc:12423]

Gene Synonyms

LCA15, RP14, TUBL1

Location

Chromosome 6: 35,465,651-35,480,715 reverse strand.

About this transcript

This transcript has 15 exons, is annotated with 21 domains and features, is associated with 7043 variant alleles and maps to 430 oligo probes.

Gene

This transcript is a product of gene ENSG00000112041.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000229771.6	TULP1-003	2162	542aa	ENSP00000229771.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS4807	O00294 Q0QD38	NM_003322.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000322263.4	TULP1-004	1941	489aa	ENSP00000319414.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding		O00294 Q0QD38	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000428978.1	TULP1-001	492	161aa	ENSP00000406765.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q0QD38 Q5TGM7	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000373892.4	TULP1-002	812	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000495781.1	TULP1-007	582	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000448446.2	TULP1-005	559	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000496434.1	TULP1-006	513	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 15, Coding exons: 15, Transcript length: 2,162 bps, Translation length: 542 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: O00294

CCDS

This transcript is a member of the Human CCDS set: CCDS4807

Version

ENST00000229771.6

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000040307 (version 2)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

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Transcript: ENST00000229771.6 TULP1-003

Summary