Transcript: ENST00000398153.2 HDDC2-002

Description

HD domain containing 2 [Source:HGNC Symbol;Acc:21078]

Gene Synonyms

C6orf74, CGI-130, NS5ATP2, dJ167O5.2

Location

Chromosome 6: 125,597,032-125,623,121 reverse strand.

About this transcript

This transcript has 6 exons, is annotated with 5 domains and features, is associated with 11348 variant alleles and maps to 333 oligo probes.

Gene

This transcript is a product of gene ENSG00000111906.13 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000398153.2	HDDC2-002	918	204aa	ENSP00000381220.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS43503	H0UI52 H0UI53 Q7Z4H3	NM_016063.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000368377.4	HDDC2-201	1513	170aa	ENSP00000357361.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H0UI53 Q7Z4H3	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000608295.1	HDDC2-004	879	108aa	ENSP00000477277.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000608284.1	HDDC2-005	538	107aa	ENSP00000477042.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000318787.9	HDDC2-001	1350	71aa	ENSP00000316242.9	Nonsense mediated decay		Q7Z4H3	-	-
ENST00000609477.1	HDDC2-009	564	71aa	ENSP00000476969.1	Nonsense mediated decay		-	-	-
ENST00000608456.1	HDDC2-010	624	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000609574.1	HDDC2-006	607	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000609021.1	HDDC2-003	3529	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000608461.1	HDDC2-007	587	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000608532.1	HDDC2-008	553	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 6, Coding exons: 6, Transcript length: 918 bps, Translation length: 204 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q7Z4H3

CCDS

This transcript is a member of the Human CCDS set: CCDS43503

Version

ENST00000398153.2

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000472493 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000398153.2 HDDC2-002

Summary