Transcript: ENST00000229335.6 AICDA-001

Description

activation-induced cytidine deaminase [Source:HGNC Symbol;Acc:13203]

Gene Synonyms

AID, ARP2, CDA2, HEL-S-284, HIGM2

Location

Chromosome 12: 8,754,762-8,765,467 reverse strand.

About this transcript

This transcript has 5 exons, is annotated with 5 domains and features, is associated with 5321 variant alleles and maps to 437 oligo probes.

Gene

This transcript is a product of gene ENSG00000111732.6 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000229335.6	AICDA-001	2819	198aa	ENSP00000229335.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS41747	A3QRX5 Q546Y9 Q5XM85 Q7Z599 Q9GZX7	NM_020661.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000543081.1	AICDA-004	1075	144aa	ENSP00000439103.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000537228.1	AICDA-005	667	188aa	ENSP00000445691.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q9GZX7	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000545512.1	AICDA-002	592	197aa	ENSP00000443060.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A3QRX5 Q5XM85 Q7Z599	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000544516.1	AICDA-003	206	68aa	ENSP00000439538.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000545576.1	AICDA-006	923	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 5, Coding exons: 5, Transcript length: 2,819 bps, Translation length: 198 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9GZX7

CCDS

This transcript is a member of the Human CCDS set: CCDS41747

Version

ENST00000229335.6

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000400575 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000229335.6 AICDA-001

Summary