Transcript: ENST00000539782.1 LDHB-010

Description

lactate dehydrogenase B [Source:HGNC Symbol;Acc:6541]

Gene Synonyms

HEL-S-281, LDH-B, LDH-H, LDHBD, TRG-5

Location

Chromosome 12: 21,796,984-21,910,791 reverse strand.

About this transcript

This transcript has 5 exons, is annotated with 7 domains and features, is associated with 51464 variant alleles and maps to 144 oligo probes.

Gene

This transcript is a product of gene ENSG00000111716.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000396076.1	LDHB-002	1538	334aa	ENSP00000379386.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS8691	A8MW50 C9J7H8 F5H793 P07195 Q5U077	NM_001174097.1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000350669.1	LDHB-001	1303	334aa	ENSP00000229319.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS8691	A8MW50 C9J7H8 F5H793 P07195 Q5U077	NM_002300.6	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000396075.1	LDHB-004	744	232aa	ENSP00000379385.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A8MW50 C9J7H8 F5H793	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000450584.1	LDHB-003	732	136aa	ENSP00000398015.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9J7H8 F5H793	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000539782.1	LDHB-010	487	102aa	ENSP00000442680.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F5H793	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000535112.1	LDHB-011	252	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000470280.1	LDHB-006	710	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000470985.2	LDHB-008	678	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000542765.1	LDHB-009	672	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000544151.1	LDHB-007	544	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 5, Coding exons: 3, Transcript length: 487 bps, Translation length: 102 residues

Incomplete CDS

3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete

Version

ENST00000539782.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000402415 (version 1)

Favourite species

All species

Recent locations

Transcript: ENST00000539782.1 LDHB-010

Summary