Transcript: ENST00000546873.1 CHPT1-009

Description

choline phosphotransferase 1 [Source:HGNC Symbol;Acc:17852]

Gene Synonyms

CPT, CPT1

Location

Chromosome 12: 102,120,101-102,137,918 forward strand.

About this transcript

This transcript has 3 exons, is associated with 7868 variant alleles and maps to 87 oligo probes.

Gene

This transcript is a product of gene ENSG00000111666.6 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000229266.3	CHPT1-001	1585	406aa	ENSP00000229266.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS9086	Q8WUD6	NM_020244.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000549872.1	CHPT1-002	1989	398aa	ENSP00000448766.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F8W1B3	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000552215.1	CHPT1-005	4342	184aa	ENSP00000448831.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000549128.1	CHPT1-004	1552	398aa	ENSP00000446994.1	Nonsense mediated decay		F8W1B3	-	-
ENST00000552351.1	CHPT1-003	1524	218aa	ENSP00000447887.1	Nonsense mediated decay		Q8WUD6	-	-
ENST00000546873.1	CHPT1-009	624	38aa	ENSP00000448369.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000552329.1	CHPT1-008	580	94aa	ENSP00000447920.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000550385.1	CHPT1-006	754	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000552213.1	CHPT1-010	598	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000546490.1	CHPT1-007	476	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 3, Coding exons: 2, Transcript length: 624 bps, Translation length: 38 residues

Incomplete CDS

5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Version

ENST00000546873.1

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000409180 (version 1)

EMBL-EBI User Survey 2024

Favourite species

All species

Recent locations

Transcript: ENST00000546873.1 CHPT1-009

Summary