Transcript: ENST00000342628.2 FOXM1-003

Description

forkhead box M1 [Source:HGNC Symbol;Acc:3818]

Gene Synonyms

FKHL16, FOXM1B, HFH-11, HFH11, HNF-3, INS-1, MPHOSPH2, MPP-2, MPP2, PIG29, TGT3, TRIDENT, WIN, trident

Location

Chromosome 12: 2,966,849-2,986,152 reverse strand.

About this transcript

This transcript has 10 exons, is annotated with 16 domains and features, is associated with 9082 variant alleles and maps to 525 oligo probes.

Gene

This transcript is a product of gene ENSG00000111206.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000342628.2	FOXM1-003	3475	801aa	ENSP00000342307.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS8516	Q08050	NM_202002.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000361953.3	FOXM1-001	3370	748aa	ENSP00000354492.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS8517	A8K591 Q08050	NM_202003.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000359843.3	FOXM1-002	3315	763aa	ENSP00000352901.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS8515	Q08050 Q53Y49	NM_021953.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000535350.1	FOXM1-009	618	206aa	ENSP00000442309.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000538564.1	FOXM1-005	693	80aa	ENSP00000444541.1	Nonsense mediated decay		H0YGS4	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000537018.1	FOXM1-008	740	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000536066.1	FOXM1-004	2518	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000545049.1	FOXM1-006	900	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000366362.3	FOXM1-007	775	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 10, Coding exons: 9, Transcript length: 3,475 bps, Translation length: 801 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q08050

CCDS

This transcript is a member of the Human CCDS set: CCDS8516

Version

ENST00000342628.2

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000398270 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

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Transcript: ENST00000342628.2 FOXM1-003

Summary