Transcript: ENST00000228682.2 GLI1-001

Description

GLI family zinc finger 1 [Source:HGNC Symbol;Acc:4317]

Gene Synonyms

GLI

Location

Chromosome 12: 57,853,921-57,866,045 forward strand.

About this transcript

This transcript has 12 exons, is annotated with 34 domains and features, is associated with 6795 variant alleles and maps to 521 oligo probes.

Gene

This transcript is a product of gene ENSG00000111087.5 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000228682.2	GLI1-001	3613	1106aa	ENSP00000228682.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS8940	B1Q2M2 E9PIB9 E9PQQ1 F5H6H8 P08151	NM_005269.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000546141.1	GLI1-202	3475	1065aa	ENSP00000441006.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS53806	E9PIB9 F5H6H8 P08151	NM_001167609.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000543426.1	GLI1-201	3394	978aa	ENSP00000437607.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS53807	E9PIB9 F5H6H8	NM_001160045.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000528467.1	GLI1-003	3196	1065aa	ENSP00000434408.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E9PIB9 F5H6H8 P08151	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000532291.1	GLI1-004	784	175aa	ENSP00000436671.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E9PIB9	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000528432.1	GLI1-005	480	129aa	ENSP00000434421.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B1Q2M2 E9PQQ1	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000527742.1	GLI1-007	676	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000530789.1	GLI1-006	314	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 12, Coding exons: 11, Transcript length: 3,613 bps, Translation length: 1,106 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: P08151

CCDS

This transcript is a member of the Human CCDS set: CCDS8940

Version

ENST00000228682.2

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000394197 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

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Transcript: ENST00000228682.2 GLI1-001

Summary