Transcript: ENST00000534673.1 TCIRG1-010

Description

T-cell, immune regulator 1, ATPase, H+ transporting, lysosomal V0 subunit A3 [Source:HGNC Symbol;Acc:11647]

Gene Synonyms

ATP6N1C, ATP6V0A3, Atp6i, OC-116, OC-116kDa, OC116, OPTB1, Stv1, TIRC7, Vph1, a3

Location

Chromosome 11: 67,806,496-67,811,671 forward strand.

About this transcript

This transcript has 8 exons, is annotated with 6 domains and features, is associated with 2884 variant alleles and maps to 201 oligo probes.

Gene

This transcript is a product of gene ENSG00000110719.5 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000265686.3	TCIRG1-001	2677	830aa	ENSP00000265686.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS8177	E9PM12 Q13488 Q6QBN6	NM_006019.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000532635.1	TCIRG1-016	2457	614aa	ENSP00000434407.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS53670	Q13488 Q6QBN6	NM_006053.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000524598.1	TCIRG1-011	940	299aa	ENSP00000432846.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E9PNA6	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000529364.1	TCIRG1-014	868	290aa	ENSP00000431437.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000529657.1	TCIRG1-002	842	217aa	ENSP00000435023.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E9PM12	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000530063.1	TCIRG1-007	220	61aa	ENSP00000432957.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q8TCH1	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000534673.1	TCIRG1-010	848	174aa	ENSP00000431174.1	Nonsense mediated decay		E9PMC5	-	-
ENST00000528981.1	TCIRG1-012	755	104aa	ENSP00000436082.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000530802.1	TCIRG1-008	223	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000525724.1	TCIRG1-009	1864	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000533005.1	TCIRG1-004	1655	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000533947.1	TCIRG1-003	956	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000524870.1	TCIRG1-005	830	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000525516.1	TCIRG1-015	708	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000527530.1	TCIRG1-013	529	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000530449.1	TCIRG1-006	525	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 8, Coding exons: 5, Transcript length: 848 bps, Translation length: 174 residues

Version

ENST00000534673.1

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000394306 (version 1)

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Transcript: ENST00000534673.1 TCIRG1-010

Summary