Transcript: ENST00000469608.1 CALCA-002

Description

calcitonin-related polypeptide alpha [Source:HGNC Symbol;Acc:1437]

Gene Synonyms

CALC1, CGRP, CGRP-I, CGRP1, CT, KC

Location

Chromosome 11: 14,988,586-14,993,818 reverse strand.

About this transcript

This transcript has 6 exons, is annotated with 9 domains and features, is associated with 2432 variant alleles and maps to 411 oligo probes.

Gene

This transcript is a product of gene ENSG00000110680.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000331587.4	CALCA-001	843	141aa	ENSP00000331746.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS7819	P01258	NM_001741.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000361010.3	CALCA-202	916	128aa	ENSP00000354286.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS31432	P06881	NM_001033953.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000486207.1	CALCA-004	851	128aa	ENSP00000417833.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS31432	P06881	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000396372.2	CALCA-003	581	141aa	ENSP00000379657.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS7819	P01258	NM_001033952.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000359642.3	CALCA-201	477	141aa	ENSP00000352663.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding		P01258	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000469608.1	CALCA-002	679	141aa	ENSP00000420618.1	Nonsense mediated decay		P01258	-	-
ENST00000494746.1	CALCA-005	1837	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 6, Coding exons: 4, Transcript length: 679 bps, Translation length: 141 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: P01258

Version

ENST00000469608.1

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000357066 (version 1)

Favourite species

All species

Recent locations

Transcript: ENST00000469608.1 CALCA-002

Summary