Transcript: ENST00000396372.2 CALCA-003

Description

calcitonin-related polypeptide alpha [Source:HGNC Symbol;Acc:1437]

Gene Synonyms

CALC1, CGRP, CGRP-I, CGRP1, CT, KC

Location

Chromosome 11: 14,990,252-14,993,819 reverse strand.

About this transcript

This transcript has 4 exons, is annotated with 9 domains and features, is associated with 1744 variant alleles and maps to 292 oligo probes.

Gene

This transcript is a product of gene ENSG00000110680.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000331587.4	CALCA-001	843	141aa	ENSP00000331746.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS7819	P01258	NM_001741.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000361010.3	CALCA-202	916	128aa	ENSP00000354286.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS31432	P06881	NM_001033953.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000486207.1	CALCA-004	851	128aa	ENSP00000417833.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS31432	P06881	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000396372.2	CALCA-003	581	141aa	ENSP00000379657.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS7819	P01258	NM_001033952.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000359642.3	CALCA-201	477	141aa	ENSP00000352663.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding		P01258	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000469608.1	CALCA-002	679	141aa	ENSP00000420618.1	Nonsense mediated decay		P01258	-	-
ENST00000494746.1	CALCA-005	1837	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 4, Coding exons: 3, Transcript length: 581 bps, Translation length: 141 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: P01258

CCDS

This transcript is a member of the Human CCDS set: CCDS7819

Version

ENST00000396372.2

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000357067 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000396372.2 CALCA-003

Summary