Transcript: ENST00000375345.1 APOC3-003

Description

apolipoprotein C-III [Source:HGNC Symbol;Acc:610]

Gene Synonyms

APOCIII, HALP2

Location

About this transcript

This transcript has 4 exons, is annotated with 6 domains and features, is associated with 2193 variant alleles and maps to 385 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000227667.3	APOC3-001	550	99aa	ENSP00000227667.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS8377	A3KPE2 C9J2Q0 P02656	NM_000040.1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000375345.1	APOC3-003	604	117aa	ENSP00000364494.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A3KPE2 B0YIW2 C9J2Q0	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000433777.1	APOC3-002	359	55aa	ENSP00000410614.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9J2Q0	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000470144.1	APOC3-004	269	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-

Summary

Statistics

Exons: 4, Coding exons: 3, Transcript length: 604 bps, Translation length: 117 residues

Version

ENST00000375345.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000142233 (version 5)

Annotation Attributes

dotter confirmed [Definitions]

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.