Transcript: ENST00000539180.1 PRPF19-005

Description

pre-mRNA processing factor 19 [Source:HGNC Symbol;Acc:17896]

Gene Synonyms

NMP200, PRP19, PSO4, SNEV, UBOX4, hPSO4

Location

Chromosome 11: 60,665,352-60,665,941 reverse strand.

About this transcript

This transcript has 2 exons, is associated with 261 variant alleles and maps to 119 oligo probes.

Gene

This transcript is a product of gene ENSG00000110107.4 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000227524.4	PRPF19-001	2157	504aa	ENSP00000227524.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS7995	F5H2I0 Q9UMS4	NM_014502.4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000541371.1	PRPF19-003	943	252aa	ENSP00000440266.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F5GY56 F5H2I0	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000546152.1	PRPF19-002	814	104aa	ENSP00000446259.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F5H2I0	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000535326.1	PRPF19-007	779	119aa	ENSP00000445435.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H0YGZ5	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000540473.1	PRPF19-006	169	45aa	ENSP00000443031.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H0YGF3	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000539960.1	PRPF19-004	796	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000539180.1	PRPF19-005	441	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 2, Coding exons: 0, Transcript length: 441 bps,

Version

ENST00000539180.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000396338 (version 1)

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Transcript: ENST00000539180.1 PRPF19-005

Summary