Transcript: ENST00000530561.1 LPXN-005

Description

leupaxin [Source:HGNC Symbol;Acc:14061]

Gene Synonyms

LDLP, LDPL

Location

About this transcript

This transcript has 10 exons, is annotated with 4 domains and features, is associated with 20224 variant alleles and maps to 417 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000528954.1	LPXN-003	1879	391aa	ENSP00000431284.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS53635	O60711	NM_001143995.1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000395074.2	LPXN-002	1833	386aa	ENSP00000378512.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS7969	E9PNX9 O60711	NM_004811.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000528489.1	LPXN-001	1751	366aa	ENSP00000461855.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B7Z5P7	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000530561.1	LPXN-005	2099	106aa	ENSP00000437094.1	Nonsense mediated decay		E9PNX9	-	-
ENST00000529915.1	LPXN-006	515	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 10, Coding exons: 5, Transcript length: 2,099 bps, Translation length: 106 residues

Version

ENST00000530561.1

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000394892 (version 1)