Transcript: ENST00000542029.1 VTN-003

Description

vitronectin [Source:HGNC Symbol;Acc:12724]

Gene Synonyms

OG-9, OG9, OG9X, V75, VN, VNT

Location

Chromosome 17: 26,696,703-26,700,110 reverse strand.

About this transcript

This transcript has 4 exons, is annotated with 12 domains and features, is associated with 1790 variant alleles and maps to 147 oligo probes.

Gene

This transcript is a product of gene ENSG00000109072.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000226218.4	VTN-001	2149	478aa	ENSP00000226218.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS11229	D9ZGG2 F5GX75 P04004	NM_000638.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000536498.1	VTN-203	2046	215aa	ENSP00000444503.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JDG5	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000438614.1	VTN-202	825	215aa	ENSP00000395142.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JDG5	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000431468.1	VTN-201	665	216aa	ENSP00000416240.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS45634	Q9HB31	NM_001080837.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000542029.1	VTN-003	501	118aa	ENSP00000440439.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F5GX75	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000539746.1	VTN-004	609	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 4, Coding exons: 3, Transcript length: 501 bps, Translation length: 118 residues

Incomplete CDS

3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete

Version

ENST00000542029.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000400319 (version 2)

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Transcript: ENST00000542029.1 VTN-003

Summary