Transcript: ENST00000580072.1 SMURF2-006

Description

SMAD specific E3 ubiquitin protein ligase 2 [Source:HGNC Symbol;Acc:16809]

Location

Chromosome 17: 62,553,759-62,559,283 reverse strand.

About this transcript

This transcript has 3 exons, is associated with 2452 variant alleles and maps to 87 oligo probes.

Gene

This transcript is a product of gene ENSG00000108854.11 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000262435.9	SMURF2-001	2918	748aa	ENSP00000262435.9	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS32707	Q96DE7 Q9HAU4	NM_022739.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000585301.1	SMURF2-002	1716	561aa	ENSP00000463804.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		J3QQM4	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000582081.1	SMURF2-003	5892	55aa	ENSP00000463531.1	Nonsense mediated decay		J3QLG1	-	-
ENST00000578386.1	SMURF2-004	3104	68aa	ENSP00000464432.1	Nonsense mediated decay		J3QRY2	-	-
ENST00000578200.1	SMURF2-007	339	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000580246.1	SMURF2-005	623	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000580072.1	SMURF2-006	581	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 3, Coding exons: 0, Transcript length: 581 bps,

Version

ENST00000580072.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000445229 (version 1)

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Transcript: ENST00000580072.1 SMURF2-006

Summary