Transcript: ENST00000251535.6 ALOX12-001

Description

arachidonate 12-lipoxygenase [Source:HGNC Symbol;Acc:429]

Gene Synonyms

12-LOX, 12LO, 12S-LOX, LOG12

Location

About this transcript

This transcript has 14 exons, is annotated with 29 domains and features, is associated with 7309 variant alleles and maps to 586 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000251535.6	ALOX12-001	2358	663aa	ENSP00000251535.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS11084	P18054	NM_000697.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000480801.1	ALOX12-003	443	147aa	ENSP00000467033.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		K7ENN9	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000406228.1	ALOX12-002	1023	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 14, Coding exons: 14, Transcript length: 2,358 bps, Translation length: 663 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: P18054

CCDS

This transcript is a member of the Human CCDS set: CCDS11084

Version

ENST00000251535.6

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000219922 (version 2)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.