Transcript: ENST00000514934.1 SGCA-006

Description

sarcoglycan, alpha (50kDa dystrophin-associated glycoprotein) [Source:HGNC Symbol;Acc:10805]

Gene Synonyms

50-DAG, A2, ADL, DAG2, DMDA2, LGMD2D, SCARMD1, adhalin

Location

Chromosome 17: 48,243,346-48,245,931 forward strand.

About this transcript

This transcript has 4 exons, is associated with 1883 variant alleles and maps to 141 oligo probes.

Gene

This transcript is a product of gene ENSG00000108823.11 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000262018.3	SGCA-001	1432	387aa	ENSP00000262018.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS32679	Q16586	NM_000023.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000451235.2	SGCA-201	1349	178aa	ENSP00000390371.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B7Z1L1	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000543315.1	SGCA-202	1060	263aa	ENSP00000444539.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F5GZD3	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000344627.6	SGCA-002	1057	263aa	ENSP00000345522.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS45729	Q16586	NM_001135697.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000504073.1	SGCA-011	696	160aa	ENSP00000422030.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000511303.1	SGCA-008	668	196aa	ENSP00000426104.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H7C5V0	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000502555.1	SGCA-004	1349	61aa	ENSP00000422817.1	Nonsense mediated decay		D6RAA4	-	-
ENST00000513821.1	SGCA-003	1090	298aa	ENSP00000426571.1	Nonsense mediated decay		E9PCT8	-	-
ENST00000512526.1	SGCA-010	577	58aa	ENSP00000426606.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000514934.1	SGCA-006	542	65aa	ENSP00000423168.1	Nonsense mediated decay		D6R9S3	-	-
ENST00000513942.1	SGCA-005	734	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000508382.1	SGCA-013	410	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000505964.1	SGCA-012	494	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 4, Coding exons: 2, Transcript length: 542 bps, Translation length: 65 residues

Version

ENST00000514934.1

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000366846 (version 1)

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Transcript: ENST00000514934.1 SGCA-006

Summary