Transcript: ENST00000225893.4 HNF1B-001

Description

HNF1 homeobox B [Source:HGNC Symbol;Acc:11630]

Gene Synonyms

FJHN, HNF-1B, HNF1beta, HNF2, HPC11, LF-B3, LFB3, MODY5, TCF-2, TCF2, VHNF1

Location

Chromosome 17: 36,046,435-36,105,237 reverse strand.

About this transcript

This transcript has 9 exons, is annotated with 16 domains and features, is associated with 26686 variant alleles and maps to 523 oligo probes.

Gene

This transcript is a product of gene ENSG00000108753.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000225893.4	HNF1B-001	2976	557aa	ENSP00000225893.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS11324	P35680 Q6FHW6	NM_001165923.1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000561193.1	HNF1B-003	1971	531aa	ENSP00000452674.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS58538	E0YMJ6 P35680	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000560016.1	HNF1B-005	1819	548aa	ENSP00000453099.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H0YL84	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000427275.2	HNF1B-004	1546	457aa	ENSP00000412212.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		P35680	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000459669.1	HNF1B-002	3481	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 9, Coding exons: 9, Transcript length: 2,976 bps, Translation length: 557 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: P35680

CCDS

This transcript is a member of the Human CCDS set: CCDS11324

Version

ENST00000225893.4

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000256807 (version 3)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000225893.4 HNF1B-001

Summary