Transcript: ENST00000457654.2 PSMD11-004

Description

proteasome (prosome, macropain) 26S subunit, non-ATPase, 11 [Source:HGNC Symbol;Acc:9556]

Gene Synonyms

MGC3844, Rpn6, S9, p44.5

Location

Chromosome 17: 30,771,492-30,808,489 forward strand.

About this transcript

This transcript has 13 exons, is annotated with 10 domains and features, is associated with 15589 variant alleles and maps to 499 oligo probes.

Gene

This transcript is a product of gene ENSG00000108671.5 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000261712.3	PSMD11-001	4098	422aa	ENSP00000261712.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS11272	J3KSW3 O00231	NM_002815.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000457654.2	PSMD11-004	2159	422aa	ENSP00000393185.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS11272	J3KSW3 O00231	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000579451.1	PSMD11-008	582	187aa	ENSP00000464434.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		J3QRY4	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000580904.1	PSMD11-009	540	5aa	ENSP00000463728.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000578213.1	PSMD11-007	480	45aa	ENSP00000462683.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		J3KSW3	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000584340.1	PSMD11-010	559	90aa	ENSP00000464475.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000493026.2	PSMD11-002	2387	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000578397.1	PSMD11-006	1178	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000585265.1	PSMD11-011	670	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000481992.1	PSMD11-005	492	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000469475.1	PSMD11-003	473	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 13, Coding exons: 13, Transcript length: 2,159 bps, Translation length: 422 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: O00231

CCDS

This transcript is a member of the Human CCDS set: CCDS11272

Version

ENST00000457654.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000256255 (version 2)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000457654.2 PSMD11-004

Summary