Transcript: ENST00000225728.3 MED31-001

Description

mediator complex subunit 31 [Source:HGNC Symbol;Acc:24260]

Gene Synonyms

3110004H13Rik, CGI-125, SOH1, Soh1

Location

About this transcript

This transcript has 4 exons, is annotated with 4 domains and features, is associated with 3624 variant alleles and maps to 314 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000225728.3	MED31-001	1654	131aa	ENSP00000225728.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS11078	I3L2J1 Q9Y3C7	NM_016060.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000574128.1	MED31-004	619	57aa	ENSP00000459723.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		I3L2J1	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000575197.1	MED31-002	593	43aa	ENSP00000458248.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		I3L0P8	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000575519.1	MED31-003	620	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 4, Coding exons: 4, Transcript length: 1,654 bps, Translation length: 131 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9Y3C7

CCDS

This transcript is a member of the Human CCDS set: CCDS11078

Version

ENST00000225728.3

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000219852 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.