Transcript: ENST00000484302.2 HOXB6-001

Description

homeobox B6 [Source:HGNC Symbol;Acc:5117]

Gene Synonyms

HOX2, HOX2B, HU-2, Hox-2.2

Location

About this transcript

This transcript has 3 exons, is annotated with 17 domains and features, is associated with 5343 variant alleles and maps to 587 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000484302.2	HOXB6-001	3434	224aa	ENSP00000420009.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS11531	P17509	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000225648.3	HOXB6-002	1660	224aa	ENSP00000225648.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS11531	P17509	NM_018952.4	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000490419.1	HOXB6-004	468	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000470193.3	HOXB6-003	371	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-

Summary

Statistics

Exons: 3, Coding exons: 2, Transcript length: 3,434 bps, Translation length: 224 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: P17509

CCDS

This transcript is a member of the Human CCDS set: CCDS11531

Version

ENST00000484302.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000358146 (version 2)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.