Transcript: ENST00000225426.4 PSMB3-001

Description

proteasome (prosome, macropain) subunit, beta type, 3 [Source:HGNC Symbol;Acc:9540]

Gene Synonyms

HC10-II, MGC4147

Location

About this transcript

This transcript has 6 exons, is annotated with 7 domains and features, is associated with 5283 variant alleles and maps to 343 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000225426.4	PSMB3-001	773	205aa	ENSP00000225426.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS11328	J3QKR3 P49720	NM_002795.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000579088.1	PSMB3-006	510	145aa	ENSP00000463198.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		J3QKR3	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000584662.1	PSMB3-002	662	107aa	ENSP00000462556.1	Nonsense mediated decay		J3KSM3	-	-
ENST00000579729.1	PSMB3-003	552	112aa	ENSP00000462128.1	Nonsense mediated decay		J3KRR2	-	-
ENST00000583873.1	PSMB3-004	562	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000581388.1	PSMB3-005	426	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 6, Coding exons: 6, Transcript length: 773 bps, Translation length: 205 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: P49720

CCDS

This transcript is a member of the Human CCDS set: CCDS11328

Version

ENST00000225426.4

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000256810 (version 2)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.