Transcript: ENST00000374429.2 CXCL12-002

Description

chemokine (C-X-C motif) ligand 12 [Source:HGNC Symbol;Acc:10672]

Gene Synonyms

IRH, PBSF, SCYB12, SDF-1a, SDF-1b, SDF1, SDF1A, SDF1B, TLSF, TLSF-a, TLSF-b, TPAR1

Location

Chromosome 10: 44,865,613-44,880,540 reverse strand.

About this transcript

This transcript has 4 exons, is annotated with 11 domains and features, is associated with 7598 variant alleles and maps to 328 oligo probes.

Gene

This transcript is a product of gene ENSG00000107562.12 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000395794.2	CXCL12-004	1052	140aa	ENSP00000379140.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS53527	P48061	NM_001178134.1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000374429.2	CXCL12-002	3532	93aa	ENSP00000363551.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS44373	P48061	NM_000609.6	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000343575.6	CXCL12-001	1857	89aa	ENSP00000339913.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS7207	P48061	NM_199168.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000395793.3	CXCL12-005	665	103aa	ENSP00000379139.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS60518	H7BYN8	NM_001277990.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000395795.4	CXCL12-201	618	90aa	ENSP00000379141.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding		P48061	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000374426.2	CXCL12-003	470	119aa	ENSP00000363548.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS31186	P48061	NM_001033886.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000496375.1	CXCL12-006	803	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000488591.1	CXCL12-007	596	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 4, Coding exons: 4, Transcript length: 3,532 bps, Translation length: 93 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: P48061

CCDS

This transcript is a member of the Human CCDS set: CCDS44373

Version

ENST00000374429.2

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000047738 (version 2)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000374429.2 CXCL12-002

Summary