Transcript: ENST00000372195.1 RAPGEF1-002

Description

Rap guanine nucleotide exchange factor (GEF) 1 [Source:HGNC Symbol;Acc:4568]

Gene Synonyms

C3G, GRF2

Location

Chromosome 9: 134,452,157-134,615,461 reverse strand.

About this transcript

This transcript has 24 exons, is annotated with 16 domains and features, is associated with 69252 variant alleles and maps to 995 oligo probes.

Gene

This transcript is a product of gene ENSG00000107263.14 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000372190.3	RAPGEF1-201	6173	1095aa	ENSP00000361264.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS48048	Q13905 Q5JUE5	NM_198679.1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000372195.1	RAPGEF1-002	6256	1094aa	ENSP00000361269.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q68DL3	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000372189.3	RAPGEF1-001	6085	1077aa	ENSP00000361263.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS48047	Q13905	NM_005312.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000414781.1	RAPGEF1-006	957	319aa	ENSP00000407210.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000427994.1	RAPGEF1-004	739	193aa	ENSP00000402174.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q5JUE5	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000419442.1	RAPGEF1-007	683	228aa	ENSP00000394296.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000438647.1	RAPGEF1-003	588	158aa	ENSP00000410640.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q5JUE9	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000481260.1	RAPGEF1-008	1034	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-

Summary

Statistics

Exons: 24, Coding exons: 24, Transcript length: 6,256 bps, Translation length: 1,094 residues

Version

ENST00000372195.1

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000054760 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

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Transcript: ENST00000372195.1 RAPGEF1-002

Summary