Transcript: ENST00000371757.2 KCNT1-002

Description

potassium channel, subfamily T, member 1 [Source:HGNC Symbol;Acc:18865]

Gene Synonyms

EIEE14, ENFL5, KCa4.1, KIAA1422, SLACK, bA100C15.2

Location

Chromosome 9: 138,594,038-138,684,949 forward strand.

About this transcript

This transcript has 31 exons, is annotated with 17 domains and features, is associated with 51538 variant alleles and maps to 635 oligo probes.

Gene

This transcript is a product of gene ENSG00000107147.7 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000371757.2	KCNT1-002	4717	1235aa	ENSP00000360822.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS35175	C9JBV2 Q5JUK3	NM_020822.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000298480.5	KCNT1-202	4830	1256aa	ENSP00000298480.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JBV2 Q5JUK3	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000487664.1	KCNT1-001	4695	1211aa	ENSP00000417851.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS65188	G5E9V0	NM_001272003.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000263604.3	KCNT1-201	4678	1230aa	ENSP00000263604.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q5JUK3	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000491806.2	KCNT1-004	3783	1221aa	ENSP00000419086.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JYL2	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000488444.2	KCNT1-005	3719	1235aa	ENSP00000419007.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JZ51	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000486577.2	KCNT1-007	3714	1213aa	ENSP00000417578.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9J9Y7	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000490355.2	KCNT1-006	3708	1234aa	ENSP00000418003.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JAX7	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000473941.1	KCNT1-010	1024	285aa	ENSP00000420764.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JBV2	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000460750.1	KCNT1-003	4738	122aa	ENSP00000418777.1	Nonsense mediated decay		F8WC49	-	-
ENST00000490363.1	KCNT1-009	4065	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000475008.1	KCNT1-008	3999	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 31, Coding exons: 31, Transcript length: 4,717 bps, Translation length: 1,235 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q5JUK3

CCDS

This transcript is a member of the Human CCDS set: CCDS35175

Version

ENST00000371757.2

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000055021 (version 2)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

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Transcript: ENST00000371757.2 KCNT1-002

Summary