Transcript: ENST00000223321.4 PSMA2-001

Description

proteasome (prosome, macropain) subunit, alpha type, 2 [Source:HGNC Symbol;Acc:9531]

Gene Synonyms

HC3, MU, PMSA2, PSC2, PSC3

Location

Chromosome 7: 42,956,460-42,971,822 reverse strand.

About this transcript

This transcript has 8 exons, is annotated with 9 domains and features, is associated with 6602 variant alleles and maps to 525 oligo probes.

Gene

This transcript is a product of gene ENSG00000106588.6 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000223321.4	PSMA2-001	1483	234aa	ENSP00000223321.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS5467	P25787 Q6MZI6	NM_002787.4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000538645.1	PSMA2-201	4237	99aa	ENSP00000440009.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q6MZI6	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000445517.1	PSMA2-006	683	164aa	ENSP00000404858.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JCK5	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000411875.1	PSMA2-002	4251	22aa	ENSP00000401954.1	Nonsense mediated decay		F8WEG3	-	-
ENST00000436986.1	PSMA2-005	1453	18aa	ENSP00000410750.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000457444.1	PSMA2-007	801	36aa	ENSP00000414832.1	Nonsense mediated decay		H7C402	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,

Summary

Statistics

Exons: 8, Coding exons: 8, Transcript length: 1,483 bps, Translation length: 234 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: P25787

CCDS

This transcript is a member of the Human CCDS set: CCDS5467

Version

ENST00000223321.4

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000250816 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000223321.4 PSMA2-001

Summary