Transcript: ENST00000341640.2 PAX4-001

Description

paired box 4 [Source:HGNC Symbol;Acc:8618]

Gene Synonyms

KPD, MODY9

Location

Chromosome 7: 127,250,346-127,255,780 reverse strand.

About this transcript

This transcript has 9 exons, is annotated with 19 domains and features, is associated with 3223 variant alleles and maps to 538 oligo probes.

Gene

This transcript is a product of gene ENSG00000106331.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000341640.2	PAX4-001	2010	343aa	ENSP00000339906.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS5797	O43316	NM_006193.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000338516.3	PAX4-201	1772	273aa	ENSP00000344297.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding		O43316	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000463946.1	PAX4-002	1613	341aa	ENSP00000451923.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		G3V4Q1	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000378740.2	PAX4-004	1088	340aa	ENSP00000368014.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding		J3KPG0	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000483494.1	PAX4-003	1565	257aa	ENSP00000473846.1	Nonsense mediated decay		Q3KNR5	-	-
ENST00000477423.1	PAX4-005	935	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 9, Coding exons: 9, Transcript length: 2,010 bps, Translation length: 343 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: O43316

CCDS

This transcript is a member of the Human CCDS set: CCDS5797

Version

ENST00000341640.2

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000349165 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

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Transcript: ENST00000341640.2 PAX4-001

Summary