Transcript: ENST00000222990.3 SNX8-001

Description

sorting nexin 8 [Source:HGNC Symbol;Acc:14972]

Gene Synonyms

Mvp1, hsa-mir-6836

Location

Chromosome 7: 2,291,405-2,354,099 reverse strand.

About this transcript

This transcript has 11 exons, is annotated with 9 domains and features, is associated with 36180 variant alleles and maps to 570 oligo probes.

Gene

This transcript is a product of gene ENSG00000106266.4 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000222990.3	SNX8-001	4727	465aa	ENSP00000222990.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS5331	C9IYC5 C9J014 C9J8E6 C9JCB9 Q9Y5X2	NM_013321.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000435060.1	SNX8-004	762	224aa	ENSP00000392437.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9IYC5 C9J014 C9J271 C9J8E6 C9JCB9	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000457286.1	SNX8-006	686	176aa	ENSP00000406954.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9IYC5 C9J014 C9J8E6 C9JCB9	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000435336.1	SNX8-002	634	160aa	ENSP00000406212.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9IYC5 C9J8E6 C9JCB9	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000447136.1	SNX8-003	583	85aa	ENSP00000403608.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9IYC5 C9JCB9	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000419693.1	SNX8-005	415	42aa	ENSP00000399127.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9IYC5	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000494722.1	SNX8-007	590	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000479689.1	SNX8-008	560	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000480807.1	SNX8-009	534	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 11, Coding exons: 11, Transcript length: 4,727 bps, Translation length: 465 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9Y5X2

CCDS

This transcript is a member of the Human CCDS set: CCDS5331

Version

ENST00000222990.3

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000322949 (version 2)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000222990.3 SNX8-001

Summary