Transcript: ENST00000222574.4 HBP1-001

Description

HMG-box transcription factor 1 [Source:HGNC Symbol;Acc:23200]

Location

Chromosome 7: 106,809,460-106,842,974 forward strand.

About this transcript

This transcript has 11 exons, is annotated with 14 domains and features, is associated with 16190 variant alleles and maps to 508 oligo probes.

Gene

This transcript is a product of gene ENSG00000105856.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000222574.4	HBP1-001	2829	514aa	ENSP00000222574.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS5741	B4DJ36 C9J5U3 C9J8V6 C9JAW1 C9JPK6 C9JQU7 H7C4S2 O60381	NM_012257.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000468410.1	HBP1-002	2704	514aa	ENSP00000420500.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS5741	B4DJ36 C9J5U3 C9J8V6 C9JAW1 C9JPK6 C9JQU7 H7C4S2 O60381	NM_001244262.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000485846.1	HBP1-003	2420	514aa	ENSP00000418738.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS5741	B4DJ36 C9J5U3 C9J8V6 C9JAW1 C9JPK6 C9JQU7 H7C4S2 O60381	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000498408.1	HBP1-013	2332	454aa	ENSP00000418017.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H7C4S2	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000497535.1	HBP1-007	702	108aa	ENSP00000417631.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9J8V6 C9JAW1 C9JPK6	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000479011.1	HBP1-009	601	111aa	ENSP00000417927.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9J5U3 C9J8V6 C9JAW1 C9JPK6	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000468401.1	HBP1-006	573	28aa	ENSP00000420281.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JPK6	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000478930.1	HBP1-004	563	70aa	ENSP00000418022.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JAW1 C9JPK6	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000464009.1	HBP1-008	478	124aa	ENSP00000420137.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9J5U3 C9J8V6 C9JAW1 C9JPK6 C9JQU7	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000607681.1	HBP1-015	476	154aa	ENSP00000475809.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000463790.1	HBP1-014	433	85aa	ENSP00000419143.1	Nonsense mediated decay		H7C574	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000461963.1	HBP1-010	581	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000468116.1	HBP1-005	579	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000463202.1	HBP1-012	2646	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000483809.1	HBP1-011	582	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 11, Coding exons: 10, Transcript length: 2,829 bps, Translation length: 514 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: O60381

CCDS

This transcript is a member of the Human CCDS set: CCDS5741

Version

ENST00000222574.4

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000349297 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

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Transcript: ENST00000222574.4 HBP1-001

Summary