Transcript: ENST00000222304.3 HAMP-002

Description

hepcidin antimicrobial peptide [Source:HGNC Symbol;Acc:15598]

Gene Synonyms

HEPC, HFE2B, LEAP-1, LEAP1, PLTR

Location

About this transcript

This transcript has 3 exons, is annotated with 6 domains and features, is associated with 1379 variant alleles and maps to 209 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000598398.1	HAMP-001	652	84aa	ENSP00000471894.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS12454	B6EU04 P81172	NM_021175.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000222304.3	HAMP-002	558	84aa	ENSP00000222304.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS12454	B6EU04 P81172	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000593580.1	HAMP-003	2624	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 3, Coding exons: 3, Transcript length: 558 bps, Translation length: 84 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: P81172

CCDS

This transcript is a member of the Human CCDS set: CCDS12454

Version

ENST00000222304.3

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000466068 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.