Transcript: ENST00000588360.1 DKFZP761J1410-009

Description

Lipid phosphate phosphatase-related protein type 2 [Source:UniProtKB/Swiss-Prot;Acc:Q96GM1]

Gene Synonyms

PRG4

Location

Chromosome 19: 11,471,942-11,474,891 forward strand.

About this transcript

This transcript has 3 exons, is associated with 1542 variant alleles and maps to 156 oligo probes.

Gene

This transcript is a product of gene ENSG00000105520.6 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000591608.1	DKFZP761J1410-002	2552	427aa	ENSP00000466898.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS59352	K7EMX8 Q69YU8	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000251473.5	DKFZP761J1410-001	2727	343aa	ENSP00000251473.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS12258	K7EQF7 Q96GM1	NM_022737.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000591329.1	DKFZP761J1410-004	633	84aa	ENSP00000467807.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		K7EQF7	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000586380.1	DKFZP761J1410-006	535	66aa	ENSP00000466698.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		K7EMX8	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000586431.1	DKFZP761J1410-005	635	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000588360.1	DKFZP761J1410-009	903	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000587801.1	DKFZP761J1410-008	739	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000588196.1	DKFZP761J1410-007	407	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 3, Coding exons: 0, Transcript length: 903 bps,

Version

ENST00000588360.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000458787 (version 1)

Favourite species

All species

Recent locations

Transcript: ENST00000588360.1 DKFZP761J1410-009

Summary