Transcript: ENST00000587398.1 ICAM5-004

Description

intercellular adhesion molecule 5, telencephalin [Source:HGNC Symbol;Acc:5348]

Gene Synonyms

TLCN, TLN

Location

About this transcript

This transcript has 2 exons, is annotated with 8 domains and features, is associated with 453 variant alleles and maps to 81 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000221980.4	ICAM5-001	3000	924aa	ENSP00000221980.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS12233	K7EIL3 Q9UMF0	NM_003259.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000587398.1	ICAM5-004	624	78aa	ENSP00000464796.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		K7EIL3	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000586004.1	ICAM5-005	567	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000586480.1	ICAM5-002	2599	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000588912.1	ICAM5-003	928	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 2, Coding exons: 1, Transcript length: 624 bps, Translation length: 78 residues

Incomplete CDS

3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete

Version

ENST00000587398.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000451220 (version 1)