Transcript: ENST00000591410.1 CLASRP-010

Description

CLK4-associating serine/arginine rich protein [Source:HGNC Symbol;Acc:17731]

Gene Synonyms

CLASP, SFRS16, SWAP2

Location

Chromosome 19: 45,542,308-45,563,700 forward strand.

About this transcript

This transcript has 6 exons, is annotated with 3 domains and features, is associated with 9653 variant alleles and maps to 147 oligo probes.

Gene

This transcript is a product of gene ENSG00000104859.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000221455.3	CLASRP-001	2234	674aa	ENSP00000221455.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS12652	K7EKC9 Q8N2M8	NM_007056.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000544944.2	CLASRP-004	2769	655aa	ENSP00000438702.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F5H0Q6 K7EKC9	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000391953.4	CLASRP-002	1941	612aa	ENSP00000375815.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS62710	F8WAG9	NM_001278439.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000588936.1	CLASRP-012	590	86aa	ENSP00000465562.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		K7EKC9	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000591904.1	CLASRP-016	506	131aa	ENSP00000467177.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		K7EP11	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000391952.3	CLASRP-003	2213	594aa	ENSP00000375814.2	Nonsense mediated decay		K7EKC9 Q8N2M8	-	-
ENST00000587112.1	CLASRP-006	867	188aa	ENSP00000466371.1	Nonsense mediated decay		K7EM61	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000591410.1	CLASRP-010	572	81aa	ENSP00000465750.1	Nonsense mediated decay		K7EKR8	-	-
ENST00000588016.1	CLASRP-013	967	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000592876.1	CLASRP-017	751	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000585615.1	CLASRP-015	633	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000588247.1	CLASRP-011	599	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000592056.1	CLASRP-009	582	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000588070.1	CLASRP-018	445	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000587472.1	CLASRP-019	345	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000585432.1	CLASRP-014	290	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 6, Coding exons: 3, Transcript length: 572 bps, Translation length: 81 residues

Version

ENST00000591410.1

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000453280 (version 1)

Favourite species

All species

Recent locations

Transcript: ENST00000591410.1 CLASRP-010

Summary